The following example shows how to use Cytoscape (v3.7.2) to create publication ready networks from assets calculated in DAVe. This example will use two components the edge_list and the node_data files.
Data
edge_list.csv
node_data.csv
Upload
Edge list
First step is to load the edge_list.
In cytoscape select File >> Import >> network from File Upload and then select the edge_list.csv file.
Set from and to columns
from set to Source Node
to set to Target Node
Select OK once the source and target columns are identified.
Overview network
Node attributes
Next load the node _data. Select File >> Import >> Table from File
Select the ID column as the variable Key
Define mappings
The uploaded node attributes should now be available to edit the network node and edge visual properties.
Specify the node and edge visual properties.
Take a look at the example cytoscape.cys file for how each of the data columns were mapped to the network.
